Boutique hotel vacation rentals in Shinjuku

4.5 out of 5 average rating, 8 reviews

A well-arranged room features two spacious beds dressed in crisp white linens. Large windows allow natural light to fill the space, adorned with soft drapes. A contemporary TV is mounted on the wall, with a minimalist dresser and a small kitchenette area visible.

Hotel room in Okubo

(All areas are non-smoking) A 4-minute walk from Higashi-Shinjuku Station! Have a great time at this newly built, unattended hotel in a great location.

I GO hotel is full of modern Japanese design, such as gentle lighting, wooden decoration, and Japanese modern design rooms.Calm Japanese-style rooms, where the taste of tatami washes away the fatigue of the trip, and cozy Western-style rooms, where clean and soft mattresses provide a comfortable space for tired travelers. It is a good location 8 minutes on foot from Shin-Okubo Station on the JR Yamanote Line and 4 minutes from Higashi-Shinjuku Station (Fukutoshin Line, Oedo Line), and it is very convenient to access popular spots such as Shinjuku, Shibuya, and Shinagawa, as well as various airports. Located in a residential area, I GO hotel offers the quietest and most relaxing space.It has a very stylish look, but you can enjoy the calm atmosphere as if you were at home.

4.88 out of 5 average rating, 696 reviews

Hotel room in Ueno

The Hideout Tokyo -(Double Room)-

We're Central Tokyo's family run hotel for those who want to travel in style. Our petite 5-room hotel offers reasonably priced compact yet cozy accommodation with many of the features you'd expect from a larger,branded property. Private shower&sink. We're located walking distance from many of Tokyo's finest sightseeing spots and just a 4/2 minute walk from JR Yamanote line,Subway Hibiya line connecting you quickly to the rest of the city. ※We’re legal hotel with hotel permit from the government

Hotel room in Nihombashiningiyoucho

An authentic Japanese room featuring tatami flooring, creating a spacious and welcoming environment. Natural light filters through the window, which overlooks a cozy raised sleeping area with bedding. A minimalist closet with wooden accents enhances the clean design of the space.

4.93 out of 5 average rating, 60 reviews

Unique modern Japanese room, 4 subway sta. 5min!

Real Japanese room! You can spend a cozy and comfortable Tokyo city life in a highly convenient location! 55 min from NARITA Airport, 25 min from HANEDA. 5 min walk from 3 subway sta. Tukiji 5 min. Ginza, Akiba, Shinjuku, Shibuya, Asakusa 15 mins! Many food stalls and restaurants from reasonable to luxurious walking distance. An authentic Japanese room with tatami. Moreover, it comes with the latest Japanese home appliances. Before check-in or after check-out, We can store your luggage for free!

4.83 out of 5 average rating, 734 reviews

The room features a modern design with a lofted sleeping area containing two single beds and an additional set of single beds below. A small kitchenette and a wooden staircase are visible, along with large windows providing natural light.

Hotel room in 墨田区石原

4 single beds in Tokyo/2 train stations: Studio B

A quiet, modern & unique structured room with 4single beds & a private bathroom. 2train stations in 10min. walk, easy access to Shinjuku, Shibuya, Akihabara, Asakusa, Tokyo Dome and Disney Resort! Not 24H open reception, MUST arrive by 11PM. After 11PM check in is not available. ＊No early check in (from 3PM) ＊No late check in (by 11PM) ＊No late check out (by 10AM) ＊No discount. ＊Max : 4people. ＊Cleaning will be done once in 5nights. Visit our Studio A room : https://www.airbnb.jp/rooms/40459587

4.91 out of 5 average rating, 103 reviews

The room features two spacious twin beds dressed in neutral tones, with soft linens and pillows. Natural light enters through horizontal blinds on a window. A sleek wooden door leads to a private bathroom, while light wood flooring complements the modern design.

Hotel room in Kagurazaka

Standard Room｜Accessible｜20mShinjuku｜Kagurazaka

Barrier-free room ideal for families or small groups. The ground-floor 30 m² twin sleeps up to 4 with two Simmons double beds. In-room: free Wi-Fi, A/C, mini-fridge, air-purifier, safe, TV and hair-dryer. Bathroom stocked with shampoo, conditioner, body & hand soap, towels, gowns, slippers, toothbrush set, cotton kit, razor, sponge and brush. No on-site parking or washer—please use nearby coin lots and laundromats. Fee-based rentals (limited): hair iron, board games, projector, Fire TV Stick.

Hotel room in Toshima City

A cozy room features a spacious bed with fresh linens, accompanied by a ceiling fan and soft lighting. An open shelving unit displays decorative items, while a bar fridge and microwave are present for convenience. Warm wood flooring adds to the welcoming ambiance.

4.97 out of 5 average rating, 237 reviews

④ Newly built in 2020/Queen bed/Modern bathroom/Rain shower Sunshine City 3 minutes

Newly built with travelers in mind. The rooms are spacious with Queen size beds (practically unheard-of in Japan). Smart TV, Wi-Fi, tea and coffee. The bathrooms are fashionable, with large walk in rain showers. LED mirrors to get you ready for whatever lighting you will encounter. Rooms have a bar fridge, microwave and kettle for you to store and prepare ready-made meals and drinks. All rooms come equipped with Air-conditioning, ceiling fans and black-out curtains. Ample storage space also!

4.89 out of 5 average rating, 36 reviews

A modern room features distinctive purple lighting along the ceiling, paired with soft white walls. A spacious bed is positioned at the back, while a sleek television and mini-fridge are located near a striped couch and a marble accented coffee table.

Hotel room in Kabukicho

Free late check out ② 10 minutes from Shinjuku

"HOTEL G7" Located in the heart of Kabukicho, the world's biggest entertainment district. 20 minutes walk from Shinjuku Station East Exit. A quick taxi ride. 15 minutes from Higashi-Shinjuku Station to Roppongi. A love hotel = motel, but with a different design. There are no hotels in this location at this price. このエリアはラブホテルエリアですが近年はairbnbで貸し出す事多いです。 Rooms will be assigned randomly. Your room may differ from the one pictured Private toilet and bathroom available All rooms are non-smoking

4.82 out of 5 average rating, 907 reviews

The hotel entrance is marked by large glass doors framed by a blend of beige and green tiled walls. A small garden is visible beside the entrance, with neatly arranged pavers leading to the main door.

Hotel room in Asakusa

New Open!2BR 1 + Bar Kitchen!Family Room for 4-5!Asakusa Temple view!Direct access to Haneda & Narita Airport!

the Moto Hotel Asakusa is a new hotel opened in June 2021. The nearest station is Ginza sen-Asakusa station 7-8mins by walking. JR Ueno station is walking by 30 mins or 3 steps by Ginza Line(from Asakusa station to Ueno station)is 6 mins. Askusa is famous for the Sensō-ji and it's only 1min from us. The development of Asakusa as an entertainment district during the Edo period so there's many delicious & traditional food & store surround us. The Kappabashi Dougu street is 7mins by foot too.

Hotel room in Takatsu Ward

A simple bedroom features a spacious bed with light bedding and neatly arranged towels. A small table is positioned beside the bed, and a compact sink is located against the wall. Natural light enters through the window, which is covered with sheer curtains.

4.87 out of 5 average rating, 76 reviews

A perfect condominium for business or leisure

・“Only 13 minutes from Shibuya” Convenient access to central Tokyo, where you can relax in a quiet living environment after enjoying sightseeing and shopping. ・Flexible accommodation styles allow you to flexibly adjust the length of stay and type of room, from sightseeing to work, short-term stays to long-term stays. ・Many residents live in share houses who are fluent in English, creating an international and diverse community. You can enjoy new friends and international exchange.

4.86 out of 5 average rating, 79 reviews

A spacious guest room features a minimalist design with natural wood accents. Two yellow decorative pillows rest on a large bed, adorned with a textured quilt. A window offers views of the city skyline, allowing natural light to brighten the room.

Hotel room in Asakusa

12-min walk to Sensoji - Boutique Hotel

一遊ホテル浅草 is a boutique hotel located in Taito City, offering excellent access to major transportation. Nestled in a quiet residential neighborhood, yet close to Tokyo’s most popular sightseeing spots, this is an ideal base for tourists, couples, and business travelers – only a 12-minute walk from the famous Sensoji Temple, where you can enjoy the blend of traditional culture and modern Tokyo vibes. Plenty of dining options nearby, from traditional Japanese food to stylish cafes.

Hotel room in Kouenjikita

A vibrant mural depicting a pack of wolves in motion covers the walls and ceiling of the room. The colorful design features flowing patterns and dynamic shapes, creating an immersive environment. Two single beds are positioned against the vivid backdrop, enhancing the artistic atmosphere.

4.94 out of 5 average rating, 107 reviews

Stay in Art 1 min from Koenji Sta./BnA Koenji 2F

BnA Home Koenji is an independent art hotel created by the Bed & Art Project (BnA)—an ambitious and experimental hospitality concept that blends art, community, and immersive travel. At BnA, guests don't just stay at a hotel—they stay inside a work of art. Each room is a one-of-a-kind collaboration, designed and built by local artists, architects, textile designers, and carpenters to create a deeply personal and unforgettable experience.

4.81 out of 5 average rating, 142 reviews

The image displays three smart pods featuring semi-double beds with dark, textured bedding. Each pod includes a mirror and a small hanging area for clothing. Soft lighting creates a calming ambiance, highlighting the modern and organized layout of the sleeping spaces.

Hotel room in Udagawacho

TheMillennialsShibuya/Mixed Smart Pod/1 Guest

Welcome to The Millennials Shibuya, a futuristic accommodation facility equipped with the world's first IOT-equipped "Smart Pod" and a lounge with a coworking space. In addition, there are plenty of common spaces, including a 24-hour shared lounge, a 24-hour self-kitchen, a 24-hour working lounge, a shared shower and toilet, and a shared laundry. 20% of the total area of the hotel is allocated to the common area.

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Popular amenities for Shinjuku boutique hotel rentals

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Family-friendly boutique hotels rentals

Hotel room in Toshima City

The room features a unique wall mural inspired by nature, showcasing stylized trees. Two spacious beds are covered with white linens, accented by soft pillows. A pendant light hangs from a wooden structure above, adding a warm glow to the calming space.

4.97 out of 5 average rating, 193 reviews

2nd Floor Artistic Twin Room Inspired by Noh Dream

Hotel room in Toshima City

A spacious room features a queen size bed with a decorative pillow and a cozy sofa. A flat-screen TV is mounted on the wall. Storage is provided with an open wardrobe and a small desk. Soft lighting illuminates the room, complemented by dark curtains.

4.94 out of 5 average rating, 126 reviews

Modern queen suite with private bathroom - rooftop

A spacious room features a brown double bed with a yellow and blue blanket casually placed. Red sofas create a cozy seating area, complemented by a television and small coffee table. Large windows allow natural light to fill the space, enhanced by soft curtains.

Hotel room in Honcho

4.57 out of 5 average rating, 154 reviews

Shinjuku 10mins! Relaxing room max 4ppl!

Hotel room in Ota City

4.64 out of 5 average rating, 162 reviews

Apartment hotel with kitchen | 25 ㎡ | Maximum 2 people

A well-appointed room features a spacious bed with white linens and cushions placed neatly. A small wooden table with a curved orange stool is positioned nearby. Natural light filters through a window, complemented by green plants. A closet and a wall-mounted television add functionality.

Hotel room in Azabudai

4.68 out of 5 average rating, 80 reviews

Contemporary studio apartment with stylish patio

A minimalistic sleeping area features tatami flooring with a spacious bed topped with a checkered blanket. Soft light is provided by recessed lighting and natural daylight filters through two windows adorned with light curtains.

Hotel room in Misuji

4.67 out of 5 average rating, 3 reviews

4F Shin-Okachimachi: A charming city where you can enjoy both the city center and downtown. Asakusa Ueno: The starting point of the Asakusa downtown area. Former Asakusa

A compact twin room features two spacious beds dressed in light-colored linens. A soft blue accent wall complements the neutral tones. A small desk with amenities is positioned against one wall, and natural light filters through a partially closed sheer curtain.

Hotel room in Hatsuchobori

4.71 out of 5 average rating, 144 reviews

New hotel/Compact Twin/2 people

A spacious room is illuminated by natural light from large windows adorned with floral curtains. A comfortable bed is positioned against the wall, featuring fresh linens. A flat-screen TV is mounted on the opposite wall, and a small waste bin is placed on the floor.

Hotel room in Narihira

4.55 out of 5 average rating, 11 reviews

Elevator, Washing Machine, 5-minute walk to Skytree Station, Airport, Direct to Disney, Kitchen, Amin Hotel

Boutique hotels rentals with a patio

A communal area is visible, featuring several long tables arranged with red chairs. Shelves filled with books line one wall. A small kitchen area is present in the background, alongside cozy seating options that enhance the relaxed environment.

Asakusa Direct 2 Bathrooms Skytree Station 5 Minutes Walk 2 Suites Airport Direct Kitchen Washing Machine Amin Hotel

A communal area is presented, featuring multiple tables with pink upholstered chairs arranged in rows. A large bookcase filled with books is located in the background, along with a kitchenette area. Soft seating is provided on one side, creating a collaborative atmosphere.

Max 10 people, 2 bathrooms, 2 suites, elevator, 5 min walk to Skytree station, direct access to airport, kitchen, washing machine

A rooftop terrace is shown at sunset, featuring various seating arrangements and decorations. People can be seen socializing as Tokyo Skytree stands prominently in the background. The vibrant sky transitions from orange to purple, creating a picturesque backdrop for gatherings.

4 bedrooms, 4 bathrooms, 4 washing machines, 4 kitchens, direct access to the airport, washing machine, elevator building, 5 minutes walk to Skytree station

A rooftop terrace is showcased, featuring several seating arrangements including a circular table and chairs. The Tokyo Skytree stands prominently in the background against a clear blue sky, enhancing the view from this communal space.

4.6 out of 5 average rating, 10 reviews

3 sets of bathrooms MAX14 people Skytree station 5 minutes 3 suite airport direct access to kitchen washing machine elevator

A spacious communal area features several large tables surrounded by red chairs. Along one wall, a shelf filled with books and magazines is visible. Modern kitchen appliances, including a microwave and coffee machine, are situated in a nearby cabinet.

Hotel room in Yokogawa

5 min walk to Skytree Station, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel

A spacious rooftop terrace offers a view of the iconic Skytree. Outdoor seating arrangements include a round table surrounded by four chairs and two lounge chairs, all set on a textured surface. Clear skies create a bright and open atmosphere.

Shibuya Direct 5 to Skytree Subway Hike 2 Suites 2 Bathroom Airport Direct Access to Kitchen Washing Machine Elevator

The hotel features a modern multi-story structure with large windows and an accessible entrance on the ground floor. A vibrant sign displays the hotel name prominently. The surrounding area includes a mix of buildings and clear blue skies, enhancing the urban atmosphere.

Direct access to the airport, 5 minutes walk to Skytree Station, 2 suites, 2 bathrooms, kitchen, washing machine, elevator, Amin Hotel

4.75 out of 5 average rating, 12 reviews

Three smart pods are displayed in a well-lit space. Each pod features a comfortable bed with a soft blanket and a spacious design. Mirrors and hangers are provided, contributing to the organized atmosphere of the sleeping area.

Hotel room in Udagawacho

TheMillennialsShibuya/Smart Pod Girls Only/1 Guest

Other boutique hotel vacation rentals

Hotel room in Takatsu Ward

A simple bedroom features a spacious bed with neatly arranged bedding. A bedside table holds a small stack of items. Above, a shelf displays framed photographs. Natural light enters through a window, framed by red curtains, providing a sense of warmth to the room.

4.85 out of 5 average rating, 95 reviews

condominium with everything you need for dailylife

4.86 out of 5 average rating, 1,026 reviews

The hotel exterior is illuminated at night, highlighting the contemporary architectural design. Large windows display a cozy lobby area with soft seating and decorative wall art. A welcoming sign reflects the hotel's name, contributing to a warm atmosphere.

Hotel room in Asakusa

New Open! 2 bedrooms 1 living room + bar kitchen! Family room for 4-5 people! Sensoji Temple View! Night view of the Skytree from the balcony! Direct access to Haneda & Narita Airport!