
Boutique hotels in San Diego County
Find and book unique boutique hotels on Airbnb
Top-rated boutique hotels in San Diego County
Guests agree: these boutique hotels are highly rated for location, cleanliness, and more.

Standard King @ The Green Room Hotel
As featured in Travel+Leisure, Condé Nast & LATimes, The Green Room Hotel is a thoughtfully designed boutique stay in hip & vibrant South O just blocks from the beach, top restaurants, & Carlsbad Village. Unlike typical rentals, there’s an inviting warmth here, from its tranquil & well-appointed shared patio to hosts regularly on site offering personal recommendations. Secure parking, cedar hot tub, surf & beach gear included. Bar, restaurant, & grocer next door. And no service or cleaning fees!

Summer Room @ Eaglenest Inn w/ Pool & Seasonal SPA
Eaglenest Inn is a charming retreat offering three cozy guest rooms and a spacious two-bedroom suite, each equipped with a smart TV and a private bathroom for ultimate comfort. Guests can enjoy breathtaking views of the surrounding mountains or the serene garden. The inn offers the flexibility to book multiple rooms or the entire house, making it an ideal venue for get-togethers, special events, and celebrations such as rehearsal dinners, birthday parties, service anniversaries, and honeymoons.

Annie Elizabeth in Boutique Hotel
Experience the tranquil privacy of our 12 deluxe cottage rooms, each distinctively decorated to create a charming and intimate ambiance. Relax on your own porch, patio, or deck and savor Julian’s peaceful outdoors. The Annie Elizabeth cottage room features a Queen bed and a whirlpool bathtub, adding an extra touch to your accommodations. All cottage rooms are equipped with in-room refrigerators, gas fireplaces, coffee makers, free WiFi, and complimentary breakfast to ensure a comfortable stay.

Hotel Narcissus - Room 4
Hotel Narcissus is a brand new 6-Room Boutique Hotel in the Logan Heights neighborhood of San Diego and features a Mexican Fusion Restaurant and Speakeasy Cocktail Bar called Alchemy. Logan Heights is one of the most beloved urban neighborhoods in San Diego due to its eclectic art scene and close proximity to Downtown. Hotel Narcissus is located at the base of the Coronado Bridge, less than 1-Mile Southeast of Petco Park. It is a 5-10 minute bike ride and a 20-25 minute walk to Downtown.

Hotel Marisol Coronado - Junior Suite
With just fifteen rooms, this intimate setting is a perfect couples retreat. The hotel even has a private courtyard where you can relax and surrender to the coastal breeze. Guests rave about our ideal location, tucked away on a quiet street, but walking distance to everything Coronado - beach, shops, restaurants, and entertainment. Jumpstart your getaway with a glass of complimentary champagne upon arrival. Ask our staff about local dining spots. Take a sunset stroll along the beach.

Borrego Springs Motel; New Level 2 EV Charger!
Cute 8 room motel with big pool and walking distance to restaurants. A true desert experience awaits! We have a big pool that you may have all to yourself. Our rooms have new mini split air conditioners which will keep you comfortable at any temperature. If you seek peace and quiet try us out. Swim, get a tan, read a book, relax, view the stars, marvel at the natural desert surroundings! If our room listed here is booked, call us directly as we have other rooms available.

Explore Gaslamp in this Trendy 2BR | Sleeps 5!
Located in the center of San Diego's top attractions, this stunning 2-bedroom suite comfortably sleeps 5 guests. Featuring a King & Queen bed, plus a Twin air mattress, enjoy amenities like free WiFi, HD Smart TV, full kitchen, and night time security. The property is meticulously cleaned and sanitized for your peace of mind. With easy access to Petco Park, Gaslamp Quarter, and more, this is the perfect home base for your San Diego adventure. Book now for a memorable stay!

Heart of San Diego | King Suite w/ Smart TV
Escape to our San Diego studio, ideally situated for exploring the city. This inviting space features a king bed, private bathroom, and a kitchenette. Enjoy amenities like a coffee maker and smart TV. Located near Balboa Park, Little Italy, and the Gaslamp Quarter, you'll have easy access to San Diego's top attractions, including Petco Park, the San Diego Zoo, and SeaWorld. Enjoy a comfortable and convenient stay in a prime location, perfect for your San Diego adventure.

San Diego Comic-Con Marriott Pulse-2 Bedroom Suite
Perfect for Comicon & Convention Center Events, the hotel is inspired by San Diego’s renowned Gaslamp Quarter, Enjoy the sleek, sophisticated setting to unwind from a day of exploration and recharge before venturing out to experience San Diego’s amazing nightlife. The suite includes 2 separate bedrooms and 2 separate living areas that are conjoined into one luxurious living space. With so much to see and do, you will need a place to come back to relax!

Adventures in Downtown from Stylish Modern Studio
Explore all of San Diego’s beautiful downtown from this gorgeously restored historic hotel. Walk to everything … Gaslamp Quarter, Petco Park, Convention Center, world-class restaurants and lounges. … QUEEN Bed plus Queen Sofa Bed … 55" Samsung Smart TV - Direct TV is included … Efficiency Kitchen / Kitchenette … Air conditioning … High ceilings, ceiling fan … Fast free WIFI … Professionally cleaned & managed

Hotel Z, Z 2 Queen Suite Mobility Accessible w/Tub
You’ll get your much needed pampering experience when staying in the comfy accommodations at Hotel Z. Located in San Diego’s Gaslamp Quarter, we provide you with modern rooms full of signature amenities from our Stayppineapple Hotel brand that will ensure an exciting stay. We’ll even help you with getting around the city. An amenity fee with tax ($28.09 per day) will be charged upon arrival.

Carriage House suite #2
The mountains are calling.... Oak Hill Inn offers 3 charming rooms each with private entrance and bathroom. The perfect location with a short 5 min. walk to the heart of down town. Our Inn boasts rustic charm with modern comforts. We're family owned and operated for over 30 year and take pride in making our guest feel welcome!
Popular amenities for San Diego County boutique hotels
Family-friendly boutique hotels

San Diego Marriott Pulse-1 Bedroom (2 double)suite

Stay in Charming APT | Modern + Prime location!

Hotel Narcissus - Room 3

Classic King with Patio @ The Green Room Hotel

Hotel Narcissus - Room 6

King + Twin with Patio @ The Green Room Hotel

King + Queen with Patio @ The Green Room Hotel

Classic King with Patio @ The Green Room Hotel
Boutique hotels with a patio

Hotel Narcissus - Room 2

Hotel Narcissus - Room 1

Winter Room @ Eaglenest Inn w/ Pool & Seasonal SPA

Autumn Room @ Eaglenest Inn w/Pool & Seasonal SPA

Oceanside condo on the sand
Other boutique hotel vacation rentals

Old Town Hotel Room - 2 beds - Breakfast Included

Standard King Harbor View - Sea Harbor Hotel

Military Graduation Room - Breakfast included

Gorgeous 2BR Gaslamp | Modern Comfort | Walkable

Two Queen 2nd Floor Pool View - Sea Harbor Hotel

Elevated 2BR in Gaslamp Prime Location | Sleeps 5!

The Surfbreak Hotel- 1 king bed

Central 2BR Hotel Suite | Stay in Historic Gaslamp
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