
Boutique hotels in Marathon
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Top-rated boutique hotels in Marathon
Guests agree: these boutique hotels are highly rated for location, cleanliness, and more.

Conch Key Villas #2 Peaceful waterfront lodging
Studio Two's waterfront rental is located on the ground level. Each unit comes with a boat slip and parking for your trailer. We can handle boats up to 25’. There is a boat ramp just 2 blocks away. We provide outside table and chairs, and just around the corner, the barbecue grill. Our accommodations include king bed, living and dining area, futon, polished terrazzo floors, waterfront patio, literally 6 feet from the water, full size and equipped kitchens, A/C and cable TV, DVD and Wi-Fi.

Large House w/ FREE Sailboat, Kayaks, Snorkel etc
The Main House is a cottage at Key Largo Cottages. We are located on the bay side of Key Largo near some of the best dive/snorkel sites, island excursions, bars, restaurants, & the Everglades. Experience water fun! A stay in one of our cottages comes with unlimited use of our kayaks, canoes, paddle boards, snorkel gear, fishing gear, &, of course, the use of one of our 22' sailboats, if you have recent sailing experience on keel boats! You won't find a better deal in the Keys!

Conch Key Villas #1. Fun, fishing & great sunsets
Studio One's waterfront rental is located on the ground level. Our units differ vastly from other Florida Keys lodgings because our property is right on Florida Bay. If you trailer your boat, the dockage is a few feet from the back door. Our docks can handle boats up to 25’ and you can park your trailer in our front lot. There is a boat ramp just two blocks away. Studio 1 can sleep 2 adults and one child (up to 12 years). We have a king size bed and a futon.

Conch House 3 Bedroom Suite at Grassy Flats Resort
Our spacious three-bedroom suites offer three private rooms with one king-sized bed, two queen-sized beds, and two full baths, with extra room for all of your water sports gear. These deluxe suites can comfortably accommodate up to six people with double occupancy per room, so grab some friends and come soak up the vibes! A full kitchen gives you all the tools and space you need for families and friends to enjoy meals together.

Conch House 2 Bedroom Suite at Grassy Flats Resort
Enjoy a Grassy Key Getaway in our spacious two-bedroom suite! With private bedrooms that each have one queen bed, you can comfortably accommodate up to four guests, with extra room to store your water sports gear. A fully equipped kitchen makes it ideal for cooking family meals and dining comfortably in the suite. This unit has two queen beds, 1.5 bathrooms, a full kitchen, living/dining area, and two private balconies.

Wreckers House Double Queen Room - Adults Only
Adults-only building, available for guests ages 21+ only. Thoughtfully furnished with mixed metals and woods, the Wreckers House tells the story of ships and their crews of "wreckers" who once salvaged goods from the sunken ships in the Florida Keys. Enjoy a sunrise view and an ocean breeze from your private balcony that overlooks the pool and the Atlantic. This room has a mini fridge and an espresso machine.

Marathon Oceanfront Suite | King Bed + Kitchenette
Escape to the Oceanfront Balcony | 1BR King (Suite), where breathtaking ocean views and luxury amenities await. This spacious suite features a plush king bed, a separate living area with a queen sofa bed, a kitchenette, and a spa-like bath with a walk-in rainfall shower. Step onto your private oceanview terrace, and experience five pools, beachfront dining, and endless coastal adventures in the Florida Keys.

Wreckers House King Room - Adults Only
Adults-only building for guests ages 21+ only. Thoughtfully furnished with mixed metals and woods, the Wreckers House tells the story of ships and their crews of "wreckers" who once salvaged goods from the sunken ships in the Florida Keys. Enjoy a sunrise view and an ocean breeze from your private balcony that overlooks the pool and the Atlantic. This room has a mini fridge and an espresso machine.

Family Room in Duck Key | Sauna, Kayak & Pools
Gather the crew in the Family Oasis—a bright, roomy hideaway where bunk beds delight the kids and a plush king bed welcomes parents. Ideal for up to five guests, this relaxing space blends laid-back comfort with family-ready convenience. Located in Hawks Cay Resort, enjoy a full day of waterside fun, unwind in your oversized room, and let island time set the pace for your unforgettable stay.

Conch Key Villas Unit #4- Overlooking Florida Bay
This upstairs unit is fully remodeled with new kitchen and bath. It has all new modern appliances with icemaker and filtered water as well as pots, pans, dishes, drip coffee maker, Keurig. USB chargers, smart TV and other modern conveniences. This unit has a private balcony with fantastic views of Florida Bay and the best sunsets in all the Keys.

Humidor House King Room - Adults Only
Adults-only building, available for guests ages 21+ only. Decorated with an ode to Caribbean cigar making, the Humidor House has a cozy, sophisticated feel. With a private oceanfront balcony that's just steps away from the water, it’s the perfect getaway for solo travelers and couples alike. This room has a mini fridge and an espresso machine.

Azul del Mar Super Deluxe Sea View Suite (Royale)
Key Largo may be famous for its intricate coral reef, the eco-wonderful everglades, spectacular sunsets, mouthwatering seafood or even Bogart and Bacall...but only a select few know that nestled in a tropical garden, far from the hustle and bustle is an intimate all-adult Florida Keys boutique hotel called Azul del Mar.
Popular amenities for Marathon boutique hotels
Family-friendly boutique hotels

King ADA w/ Views in Duck Key | Marina, Spa & Pool

Poolside Room w/ Kayak & Sauna | No Hidden Fee!

Marathon Beachfront | 2 Queens + Veranda

ADA Room w/ Views, Spa & Water Fun | No Hidden Fee

Duck Key Trip! | ADA Family Rm w/ Snorkeling + Spa

Marathon Beachfront | 2Kings, Veranda + 2LuxeBaths

Tropical Duck Key Escape! | King Rm w/ Pools & Spa

Marathon Oceanfront Suite | Balcony + Kitchenette
Boutique hotels with a patio

Resort View Family Suite

Conch Key Villas #1. Fun, fishing & great sunsets

Wreckers House Double Queen Room - Adults Only

Conch Key Villas #2 Peaceful waterfront lodging
Other boutique hotel vacation rentals

Wreckers House King Room - Adults Only

Humidor House King Room - Adults Only

Conch Key Villas #2 Peaceful waterfront lodging

Conch House 3 Bedroom Suite at Grassy Flats Resort

Family Room in Duck Key | Sauna, Kayak & Pools

King Suite Sea View

Conch House 2 Bedroom Suite at Grassy Flats Resort

Conch Key Villas #1. Fun, fishing & great sunsets
Quick stats about boutique hotels in Marathon

Total vacation rentals
Explore 30 vacation rentals in Marathon

Nightly prices starting at
Marathon vacation rentals start at G$50,132 GYD per night before taxes and fees

Verified guest reviews
Over 1,490 verified reviews to help you choose

Pet-friendly vacation rentals
Find 10 rentals that welcome pets

Vacation rentals with a pool
30 properties feature pools

Rentals with dedicated workspaces
10 properties have a dedicated workspace

Wi-Fi availability
30 of Marathon vacation rentals include wi-fi access

Popular amenities for guests
Guests love Kitchen, Wifi, and Pool across Marathon rentals

4.7 Average rating
Marathon stays receive an average rating of 4.7 out of 5 from guests
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- Everglades National Park
- Sombrero Beach
- Smathers Beach
- Calusa Beach & Loggerhead Beach
- Sea Oats Beach
- Long Beach
- Bahia Honda State Park
- Conch Key
- Theater of the Sea
- Seven Mile Bridge
- Key Largo Kampground And Marina
- Fort Zachary Taylor Historic State Park
- Dolphin Research Center
- Ernest Hemingway Home & Museum
- Sunset Park
- Calusa Campground
- Robbies Marina Of Islamorada
- Key West Lighthouse Museum
- Florida Keys Aquarium Encounters
- Key West Butterfly & Nature Conservatory
- The Turtle Hospital
- Founder's Park
- Southernmost Point
- History Of Diving Museum




