
Boutique hotels in Thousand Islands
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Top-rated boutique hotels in Thousand Islands
Guests agree: these boutique hotels are highly rated for location, cleanliness, and more.

Island Bay Waterfront Captains Suite
Our one of a kind location is nested right on the edge of the Village of historic Clayton, with our upstairs studio style suite overlooking our waterfront lawn and dock area, unique with great views and centrally located right in the heart of the 1000 islands area. New from top to bottom with all amenities and private balcony with dockage right in front available, a boaters dream! King size bedroom with Full kitchenette with all the essentials with full 2 couch living area with modern amenities!

The Frederick Suite – Stonewater Manor B&B
Welcome to the Frederick Suite at the Stonewater Manor B&B. We are located 2 minutes from the Gananoque Boat Lines Thousand Islands Tours dock, the Arthur Child and Antique Boat Museums, the beach and Joel Stone Park and the 1000 Islands Playhouse. Our Frederick Suite is a cozy room that has good views of the Gananoque harbour and St. Lawrence River. This season, as a more Covid friendly option, we are offering continental breakfasts served to your room, included in the rate for your stay.

Island Bay Waterfront -River View Room
Welcome to the Island Bay stays! Right on the edge of Historic Clayton NY, enjoy our super newly renovated waterfront “Aparthotel” style stay! Our elevated well insulted rooms and suite apartments have all the newest amenities to keep you connected and even better yet, disconnecting and relaxing to take in the 1000 islands by land or boat! Centrally located, less than a 10 min walk to downtown, Dockage available, with boat ramp and Clayton Marina and boat rentals right across the way!

Cribs on Main- Picton Hotel - Suite 1
Suite 1 spans 414 sq ft, featuring a luxurious king-sized bed and radiant floor heating. Indulge in the deep soaker bathtub, walk-in shower, and separate water closet. Enjoy the workstation or unwind in front of the 75" smart TV with streaming services. Admire the custom finishes and use the mini-bar for your convenience. Overlooking Main Street for a charming view, Suite One has dreamy decor, evoking your favourite southern beach vacation spot. Sit back, relax, and enjoy your stay.

The Ashley Suite 6 Newly Renovated Boutique Motel
Nestled just 5 minutes north of the 401 highway, 30 minutes north of PEC, The Ashley is a charming oasis of modern comfort and convenience. A renovated gem boasts a sleek and contemporary design, ensuring a memorable stay in every single unit. Whether you're here for a golf getaway or to explore the local attractions, you'll find our motel to be the perfect starting point for your adventure. Book your stay with us and discover a world of relaxation, excitement, and golfing fun.

Moira Lake Motel-King Room
Room with 1 King size bed at the Moira Lake Motel. Waterfront Beach access and free parking just 5 minutes from our Motel. Our newly renovated rooms include a Full Kitchen with Fridge/ Freezer, Microwave, Stove and Dishwasher. 50 inch Smart TVs with Satellite and high speed internet. New luxurious mattresses, bedding and furniture with tasteful decor to enjoy. Each Motel Room includes an exclusive Firepit per room with 4 chairs and a BBQ for family outdoor enjoyment.

Beautifully designed suite on Wellington Main ST.
This stylish studio is close to all the must-see destinations in PEC! Steps away from the best restaurants and shopping in Wellington, just a short walk to the beach or Millennium trail. This beautiful suite comes equipped with a full kitchen and laundry, spacious private deck overlooking Main Street and is right above the Creekside Cafe. Our small boutique hotel has two guests suites so please inquire if you require more space. STA licence # ST-2021-0229

Boutique Suites in PEC with Hot Tub
Welcome to Fancie's PEC! - Family-run boutique accommodation with 5 separate guest suites. - Direct access to The Bay of Quinte offering scenic waterfront views. - Enjoy a dedicated guest kitchen, fast Wi-Fi, and a dining room. - Complimentary amenities include linens, towels, and coffee/tea. - Outdoor amenities available for all guests, including a 5-person hot tub! - Summer parking pass for Sandbanks Provincial Park, known for stunning beaches.

Biglake Stay: Scene 2
Stylish, private and centrally located hotel style suite in the heart of Wellington. Kitchenette and sitting room in a shared lobby. Steps to some of the best restaurants, bars and cafes in the County. The perfect launch pad for your visit to the County, the suite has a bright spa-like ensuite and luxuriously comfortable Queen bed. The perfect ensuite Queen room to retreat to after a day visiting the amazing PEC wineries, shops and beaches.

The Garden Room - Chrysler House Heritage Inn
Chrysler House is a unique 6800 sq ft Georgian-Victorian style mansion built in 1826. It is located in the historical heart of Gananoque and the beautiful 1000 Islands; just minutes away from the waterfront, marina, boat line, beach, downtown shopping and restaurants. The Garden Room is light and spacious and features a luxurious king size bed, ensuite bathroom with jet tub and walk-in shower, and private entrance onto the backyard deck.

The Heritage Room - Chrysler House Heritage Inn
Chrysler House is a unique 6800 sq ft Georgian-Victorian style mansion built in 1826. It is located in the historical heart of Gananoque and the beautiful 1000 Islands; just minutes away from the waterfront, marina, boat line, beach, downtown shopping and restaurants. The Heritage Room features a double bed and twin bed, and a three piece ensuite bathroom with walk-in shower. It is full of Victorian charm and overlooks the back garden.

Beautiful boutique suite best location.
Our stylish studio is the perfect place to enjoy the best Prince Edward County has to offer. Our suites are just upstairs from the county's newest brunch hotspot Creekside Cafe where you can enjoy breakfast/ lunch/brunch & cocktails daily from 8-2pm. Located just off of Main Street in Wellington you are steps away from the Midtown Brewing Company, Piccolina Marcatto, and Drake Devonshire. STA license # ST-2021-0229
Popular amenities for Thousand Islands boutique hotels
Family-friendly boutique hotels

Sunset Suite, Private, Hotel Style

Beautifully designed suite on Wellington Main ST.

Beautiful boutique suite best location.

The Peninsula Room - Chrysler House Heritage Inn

Island Bay Waterfront - Relaxing Balcony room

The Garden Room - Chrysler House Heritage Inn

Island Bay Waterfront -River View Room

The Heritage Room - Chrysler House Heritage Inn
Boutique hotels with a patio

#2 La Boheme

Boutique Family Suite with Living Room and Hot Tub

#4 Royal Coachman

Island Bayside "Getaway Grotto" room

#1 Prospector

Moira Lake Motel - Double Room

#5 Heirloom
Other boutique hotel vacation rentals

Beautifully designed suite on Wellington Main ST.

Beautiful boutique suite best location.

The Peninsula Room - Chrysler House Heritage Inn

Island Bay Waterfront - Relaxing Balcony room

The Garden Room - Chrysler House Heritage Inn

Island Bay Waterfront -River View Room

Biglake Stay: Scene 2

The Heritage Room - Chrysler House Heritage Inn
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