
Boutique hotels in Thousand Islands
Find and book unique boutique hotels on Airbnb
Top-rated boutique hotels in Thousand Islands
Guests agree: these boutique hotels are highly rated for location, cleanliness, and more.

Boutique Family Suite with Living Room and Hot Tub
Welcome to Fancie's PEC, a boutique hotel located directly on the Bay of Quinte in Prince Edward County. To learn more about our offering please search Fancie's PEC online. This is our largest suite (equipped with its own dedicated living room) and is the perfect place for friends to gather in Prince Edward County. During your stay, take in the gorgeous views of the Bay of Quinte, enjoy the spectacular sunsets, and have access to our guest amenities like a kitchen, living room, and dining room!

The Frederick Suite – Stonewater Manor B&B
Welcome to the Frederick Suite at the Stonewater Manor B&B. We are located 2 minutes from the Gananoque Boat Lines Thousand Islands Tours dock, the Arthur Child and Antique Boat Museums, the beach and Joel Stone Park and the 1000 Islands Playhouse. Our Frederick Suite is a cozy room that has good views of the Gananoque harbour and St. Lawrence River. This season, as a more Covid friendly option, we are offering continental breakfasts served to your room, included in the rate for your stay.

Island Bay Waterfront -River View Room
Welcome to the Island Bay stays! Right on the edge of Historic Clayton NY, enjoy our super newly renovated waterfront “Aparthotel” style stay! Our elevated well insulted rooms and suite apartments have all the newest amenities to keep you connected and even better yet, disconnecting and relaxing to take in the 1000 islands by land or boat! Centrally located, less than a 10 min walk to downtown, Dockage available, with boat ramp and Clayton Marina and boat rentals right across the way!

Boutique Suites in PEC with Hot Tub
Welcome to Fancie's PEC! - Family-run boutique accommodation with 5 separate guest suites. - Direct access to The Bay of Quinte offering scenic waterfront views. - Enjoy a dedicated guest kitchen, fast Wi-Fi, and a dining room. - Complimentary amenities include linens, towels, and coffee/tea. - Outdoor amenities available for all guests, including a 5-person hot tub! - Summer parking pass for Sandbanks Provincial Park, known for stunning beaches.

The King's Room - Chrysler House Heritage Inn
Chrysler House is a unique 6800 sq ft Georgian-Victorian style mansion built in 1826. It is located in the historical heart of Gananoque and the beautiful 1000 Islands; just minutes away from the waterfront, marina, boat line, beach, downtown shopping and restaurants. The King's Room features a king size bed and private bathroom with jet tub and shower *located down the hall from the bedroom*. It overlooks the Gananoque river and bridge.

The Garden Room - Chrysler House Heritage Inn
Chrysler House is a unique 6800 sq ft Georgian-Victorian style mansion built in 1826. It is located in the historical heart of Gananoque and the beautiful 1000 Islands; just minutes away from the waterfront, marina, boat line, beach, downtown shopping and restaurants. The Garden Room is light and spacious and features a luxurious king size bed, ensuite bathroom with jet tub and walk-in shower, and private entrance onto the backyard deck.

The Peninsula Room - Chrysler House Heritage Inn
Chrysler House is a unique 6800 sq ft Georgian-Victorian style mansion built in 1826. It is located in the historical heart of Gananoque and the beautiful 1000 Islands; just minutes away from the waterfront, marina, boat line, beach, downtown shopping and restaurants. The Peninsula Room is a light and cozy room that features a twin bed and an ensuite half bathroom. A private shower is available outside of the bedroom on the first floor.

The Heritage Room - Chrysler House Heritage Inn
Chrysler House is a unique 6800 sq ft Georgian-Victorian style mansion built in 1826. It is located in the historical heart of Gananoque and the beautiful 1000 Islands; just minutes away from the waterfront, marina, boat line, beach, downtown shopping and restaurants. The Heritage Room features a double bed and twin bed, and a three piece ensuite bathroom with walk-in shower. It is full of Victorian charm and overlooks the back garden.

The Painter's Suite - Chrysler House Heritage Inn
Chrysler House is a unique 6800 sq ft Georgian-Victorian style mansion built in 1826. It is located in the historical heart of Gananoque and the beautiful 1000 Islands; just minutes away from the waterfront, marina, boat line, beach, downtown shopping and restaurants. The spacious Painter's Suite features a queen bed, private living room, and an ensuite bathroom. It overlooks the Gananoque river and back garden.

Cribs on Main-Picton Hotel - Suite 2
Suite 2 boasts 356 sq ft and features a king bed, heated floors, and a walk-in shower with a window to the bedroom for added light (privacy blind included). Enjoy the convenience of a separate water closet, work station, 75" flatscreen TV, and a mini-bar. With a view of Main Street, this room blends fresh, modern styling with cozy County comfort. Relax in luxury

The Pine Street Inn - Room 7
The Pine Street Inn — Cozy, Stylish, and Affordable Welcome to The Pine Street Inn, your home away from home where comfort meets convenience in a warm, affordable setting. Perfect for traveling professionals, military personnel, and long-term guests, our inn offers a cozy place to rest and recharge after a busy day.

Sunrise King Suite, Private, Hotel Style
The Sunrise Suite is located at Merrickville Guest Suites, in the historic village of Merrickville, along the Rideau Heritage Route. This hip designer style, private suite includes a kitchen, AC, king bed, pull-out sofa, free Wi-Fi & free parking.
Popular amenities for Thousand Islands boutique hotels
Family-friendly boutique hotels

Beautiful boutique suite best location.

Biglake Stay: Scene 1

Biglake Stay: Scene 2

Beautifully designed suite on Wellington Main ST.
Other boutique hotel vacation rentals

Boutique Family Suite with Living Room and Hot Tub

Cribs on Main-Picton Hotel - Suite 2

The Peninsula Room - Chrysler House Heritage Inn

Boutique Suites in PEC with Hot Tub

Island Bay Waterfront - Relaxing Balcony room

The Garden Room - Chrysler House Heritage Inn

Island Bay Waterfront -River View Room

The Heritage Room - Chrysler House Heritage Inn
Destinations to explore
- Apartment rentals Thousand Islands
- Guesthouse rentals Thousand Islands
- Cottage rentals Thousand Islands
- Smoking-friendly rentals Thousand Islands
- Family-friendly rentals Thousand Islands
- House rentals Thousand Islands
- Cabin rentals Thousand Islands
- Condo rentals Thousand Islands
- Rentals with an EV charger Thousand Islands
- Rentals with a washer and dryer Thousand Islands
- Rentals with lake access Thousand Islands
- Rentals with breakfast Thousand Islands
- Rentals with a hot tub Thousand Islands
- Rentals with a kayak Thousand Islands
- Waterfront rentals Thousand Islands
- Rentals with a fire pit Thousand Islands
- Townhouse rentals Thousand Islands
- Beachfront rentals Thousand Islands
- Rentals with a fireplace Thousand Islands
- Rentals with a patio Thousand Islands
- Hotel rooms Thousand Islands
- Bed and breakfasts Thousand Islands
- Rentals with outdoor seating Thousand Islands
- Rentals with pools Thousand Islands
- Island rentals Thousand Islands
- Private suite rentals Thousand Islands
- Rentals with beach access Thousand Islands
- Pet-friendly rentals Thousand Islands





