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Boutique hotels in Jefferson County

Find and book unique boutique hotels on Airbnb

Top-rated boutique hotels in Jefferson County

Guests agree: these boutique hotels are highly rated for location, cleanliness, and more.

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Guest favorite
A well-lit room features a large window with a view of greenery, complemented by a wooden ceiling. A compact kitchenette is equipped with a coffee maker and a small refrigerator. A comfortable chair is positioned near the window, and a cozy bed adds to the inviting space.
Hotel room in Clayton
4.9 out of 5 average rating, 99 reviews

Island Bay Waterfront -River View Room

Welcome to the Island Bay stays! Right on the edge of Historic Clayton NY, enjoy our super newly renovated waterfront “Aparthotel” style stay! Our elevated well insulted rooms and suite apartments have all the newest amenities to keep you connected and even better yet, disconnecting and relaxing to take in the 1000 islands by land or boat! Centrally located, less than a 10 min walk to downtown, Dockage available, with boat ramp and Clayton Marina and boat rentals right across the way!

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Hotel room in Watertown

The Pine Street Inn - Room 7

The Pine Street Inn — Cozy, Stylish, and Affordable Welcome to The Pine Street Inn, your home away from home where comfort meets convenience in a warm, affordable setting. Perfect for traveling professionals, military personnel, and long-term guests, our inn offers a cozy place to rest and recharge after a busy day.

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 4

The Pine Street Inn — Cozy, Stylish, and Affordable Welcome to The Pine Street Inn, your home away from home where comfort meets convenience in a warm, affordable setting. Perfect for traveling professionals, military personnel, and long-term guests, our inn offers a cozy place to rest and recharge after a busy day.

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 2

The Pine Street Inn — Cozy, Stylish, and Affordable Welcome to The Pine Street Inn, your home away from home where comfort meets convenience in a warm, affordable setting. Perfect for traveling professionals, military personnel, and long-term guests, our inn offers a cozy place to rest and recharge after a busy day.

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 6

The Pine Street Inn — Cozy, Stylish, and Affordable Welcome to The Pine Street Inn, your home away from home where comfort meets convenience in a warm, affordable setting. Perfect for traveling professionals, military personnel, and long-term guests, our inn offers a cozy place to rest and recharge after a busy day.

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 1

The Pine Street Inn — Cozy, Stylish, and Affordable Welcome to The Pine Street Inn, your home away from home where comfort meets convenience in a warm, affordable setting. Perfect for traveling professionals, military personnel, and long-term guests, our inn offers a cozy place to rest and recharge after a busy day.

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 3

The Pine Street Inn — Cozy, Stylish, and Affordable Welcome to The Pine Street Inn, your home away from home where comfort meets convenience in a warm, affordable setting. Perfect for traveling professionals, military personnel, and long-term guests, our inn offers a cozy place to rest and recharge after a busy day.

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 5

The Pine Street Inn — Cozy, Stylish, and Affordable Welcome to The Pine Street Inn, your home away from home where comfort meets convenience in a warm, affordable setting. Perfect for traveling professionals, military personnel, and long-term guests, our inn offers a cozy place to rest and recharge after a busy day.

Guest favorite
A spacious room features a wooden ceiling and blue walls. A large wooden bed is positioned near a wall-mounted television. A small bedside table with a lamp stands next to the bed, and a decorative sign spelling 'RELAX' is visible on a dresser.
Hotel room in Clayton
4.99 out of 5 average rating, 75 reviews

Island Bay Waterfront - Relaxing Balcony room

Our newly available space include stylish comfortable amenities, sparkly clean room located right on the edge of Clayton is close to must-see destinations and located right on the water tucked in a bay right off Rt12

Popular amenities for Jefferson County boutique hotels

WifiPoolFree parking on premisesAir conditioning

Family-friendly boutique hotels

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 7

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 4

Guest favorite
A spacious room features a wooden ceiling and blue walls. A large wooden bed is positioned near a wall-mounted television. A small bedside table with a lamp stands next to the bed, and a decorative sign spelling 'RELAX' is visible on a dresser.
Hotel room in Clayton
4.99 out of 5 average rating, 75 reviews

Island Bay Waterfront - Relaxing Balcony room

Guest favorite
A well-lit room features a large window with a view of greenery, complemented by a wooden ceiling. A compact kitchenette is equipped with a coffee maker and a small refrigerator. A comfortable chair is positioned near the window, and a cozy bed adds to the inviting space.
Hotel room in Clayton
4.9 out of 5 average rating, 99 reviews

Island Bay Waterfront -River View Room

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 2

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 6

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 1

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 3

Other boutique hotel vacation rentals

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 7

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 4

Guest favorite
A spacious room features a wooden ceiling and blue walls. A large wooden bed is positioned near a wall-mounted television. A small bedside table with a lamp stands next to the bed, and a decorative sign spelling 'RELAX' is visible on a dresser.
Hotel room in Clayton
4.99 out of 5 average rating, 75 reviews

Island Bay Waterfront - Relaxing Balcony room

Guest favorite
A well-lit room features a large window with a view of greenery, complemented by a wooden ceiling. A compact kitchenette is equipped with a coffee maker and a small refrigerator. A comfortable chair is positioned near the window, and a cozy bed adds to the inviting space.
Hotel room in Clayton
4.9 out of 5 average rating, 99 reviews

Island Bay Waterfront -River View Room

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 2

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 6

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 1

Superhost
Hotel room in Watertown

The Pine Street Inn - Room 3

Destinations to explore