Hotels in Lincoln County

Crow's Nest @ The Thistle Inn

Indulge in luxury at The Thistle Inn, Boothbay Harbor. Our expansive Inn Suite offers two floors of refined elegance for families and groups. Relax in the regal master bedroom or the spacious living area with a sleeper sofa. Enjoy coastal inspired décor and ample natural light. A fully equipped kitchen awaits culinary enthusiasts. Two twin beds ensure comfort for companions, with modern bathrooms for convenience. Experience extraordinary hospitality where every detail exceeds expectations.

The room features two comfortable double beds with neutral bedding, positioned beside a sleek nightstand. A window with horizontal blinds allows natural light to fill the space, while a blue accent wall adds a touch of color. A small table lamp and trash bin are also visible.

5 out of 5 average rating, 4 reviews

Cozy & Stylish | Premium Double Room Near Downtown

Discover comfort and convenience at Flagship Inn & Suites. Our first-floor, non-smoking room features two double beds and a full bath, offering a relaxing, pet-friendly retreat. Enjoy modern amenities, including complimentary Wi-Fi, TV, air conditioning, microwave, mini-refrigerator, and coffee maker. Start your day with a complimentary continental breakfast. Thoughtfully designed for your comfort, our accommodations ensure a memorable stay where relaxation meets exceptional hospitality.

The exterior of a multi-level white house is presented, featuring balconies, a glass-enclosed sunroom, and lush greenery in the foreground. Two classic outdoor chairs are positioned invitingly on the lawn, offering a comfortable spot to enjoy the pleasant surroundings.

5 out of 5 average rating, 15 reviews

Boothbay Harbor Ocean View Garden Suite!

Room 9 at Admiral's Quarters Inn – Cozy Harbor View Room in Boothbay Harbor Room 9 offers a private ground-floor entrance with no steps, stunning harbor views, and direct access to gardens. Relax on your private patio in Maine rockers, soak in the sea breeze, and watch harbor life. The room includes a queen bed, fireplace, mini fridge, and a compact bathroom. Perfect for a peaceful getaway. Book today for a charming stay in Boothbay Harbor, Maine!

A two-story white house features a large balcony and multiple outdoor seating areas. Lush green grass surrounds the property, framed by carefully maintained shrubs and flowers. The structure is complemented by large windows, and an enclosed sunroom is visible on the lower level.

4.9 out of 5 average rating, 10 reviews

Admiral’s Quarters 14 –Penthouse King Suite, VIEWS

Admiral’s Quarters Room 14 is a premium 2-room penthouse suite with stunning harbor, lighthouse, and ocean views. The king bedroom features a wall of windows, private balcony, and fireplace. A second room offers a twin trundle bed and built-in storage with a mini fridge. Enjoy a walk-in glass shower and two entrances—one private. Perfect for couples or small groups seeking a scenic, quiet retreat in Boothbay Harbor.

A spacious balcony is featured, overlooking the harbor where boats can be seen in the water. Three white Adirondack chairs are arranged on the wooden deck, inviting relaxation while enjoying the expansive views of the surrounding area.

4.82 out of 5 average rating, 17 reviews

Greenleaf Inn 1 King Suite, Balcony, Harbor View

A bright, cheery and spacious room located on the first floor of the main house. This room has nice views out toward the islands, lighthouses and open ocean as well as a private balcony that overlooks the inner harbor and Commercial Street. This room has a king sized bed, heat, air-conditioning, alarm clock, fan, 43 Smart TV, and ambient lighting. This room has a full private bathroom with tub/shower combination.

A scenic harbor view is captured from the private double balcony, showcasing several boats moored in the calm water. The backdrop features green hills and buildings along the shoreline, with a parking area visible in the foreground.

4.89 out of 5 average rating, 35 reviews

Main Inn Harbor View

This two-room two queen bed handicap accessible unit is located on the second floor (street level, no stairs) of our Main Inn Building with a private double balcony at the Tugboat Inn. Along with beautiful views of the harbor, we also have an onsite restaurant with all your seafood and land favorites! We are also walking distance from downtown Boothbay Harbor where you can enjoy many shops and restaurants.

A classic coastal home is presented with multiple balconies and large windows, allowing natural light to fill the interior. White Adirondack chairs are placed on the grass in the foreground, offering a serene spot to take in the surrounding landscape.

5 out of 5 average rating, 5 reviews

Premier Ocean View 2 Room King Suite Patio

Admiral’s Quarters Room 13 is a spacious, first-floor king suite with stunning views of Boothbay Harbor, two lighthouses, and the ocean beyond. French doors open to a private balcony off the salon-style living room with a fireplace, reading nook, and dining area. The adjoining king bedroom and private bath offer peace and comfort. Quiet, charming, and perfect for a romantic getaway on the Maine coast.

A spacious deck features three bright white Adirondack chairs, arranged to overlook scenic water views. The surrounding railing frames the picturesque harbor and boats below, while natural light highlights the warm wooden flooring underfoot.

4.86 out of 5 average rating, 21 reviews

Alyson's Room - Main House King, Ocean Views!

Bright and spacious, Greenleaf Inn Room 5 features ocean views, a king Helix mattress, smart-charging lamps, and a cozy reading chair. Enjoy personalized comfort with A/C, heat, and a ceiling fan. The large private bathroom includes plush towels and robes. Located in the main house, just a short walk to Boothbay Harbor’s shops, dining, and waterfront attractions—perfect for a peaceful Maine getaway.

A cozy bedroom is presented with a spacious bed dressed in a peach-patterned coverlet. Lightwood paneling adorns one wall, complementing the light-colored flooring. A decorative rug adds a touch of elegance, while a bedside table displays a lamp and a decorative item.

Hotel room in Boothbay

4.59 out of 5 average rating, 17 reviews

More then a Motel with Garden

Welcome to our tranquil hotel with lush gardens and newly renovated rooms, offering a blend of modern comfort and style. Explore our town through our partnerships with a cozy coffee and bakery shop, a top-notch seafood and sushi restaurant, and an exclusive ice cream factory, all offering our guests special discounts. Experience hospitality intertwined with local flavors for an unforgettable stay.

A spacious outdoor deck features three white Adirondack chairs arranged to overlook scenic water views. The surrounding railing offers a clear perspective of the harbor, with boats and coastal scenery visible in the distance under a bright sky.

5 out of 5 average rating, 6 reviews

GL4 | Corner King w/ Harbor & Island Views!

Relax in this bright, second-floor King room at the Greenleaf Inn with sweeping views of Boothbay Harbor and nearby islands. Enjoy a plush pillow-top bed, sitting area, closet, A/C, and ceiling fan. The private bath features a large shower, soft towels, and cozy robes. Located just steps from downtown shops, restaurants, and waterfront activities—perfect for a peaceful coastal getaway.

An expansive private balcony features three white Adirondack chairs positioned to overlook Boothbay Harbor. The wooden deck offers a panoramic view of the marina, with the calm waters and distant shore visible in the background.

5 out of 5 average rating, 3 reviews

GL3 King Suite, Large Bath, Balcony, Harbor Views!

Spacious king room on the second floor with a private balcony overlooking Boothbay Harbor. Features a plush pillow-top king bed, dresser, closet, and a large private bathroom with a hand-painted ocean mural. Enjoy stunning harbor views, morning coffee on the balcony, and easy access to shops, dining, and waterfront activities—all from the comfort of the Greenleaf Inn.

An open-air deck with a covered seating area is visible, featuring green Adirondack chairs and a view of the serene waterfront. The sun shines through, creating a soft glow, while surrounding pine trees and flowering plants enhance the coastal atmosphere.